Anúncios

1st GFC test

13 novembro 2018, 10:58 • Miguel Nobre Parreira Cacho Teixeira

Dear students, 


The GFC test on Monday will start at 7pm, instead of the previously indicated time. This is due to the fact that some of you have lab classes till 6:30 pm. 

I hope this will not cause to much stress!
Regards,
Miguel Teixeira

1st test - schedule for clarification of doubts

12 novembro 2018, 17:03 • Nuno Gonçalo Pereira Mira

Students, 

In preparation for the upcoming test i have booked room VA115 (in the Civil Eng building) from 14 till 15:30 for the next Thursday Nov15 to clarify doubts and questions you may have. If no students are present in the room until 14:15 this schedule class will be canceled. 

Students from the Masters in Microbiology that may not be at IST in this schedule can come to my office during the morning from 9:30 till 11 (please email me the day before so that i am expecting you!)

See you soon,

NPM

1st Test

8 novembro 2018, 09:44 • Miguel Nobre Parreira Cacho Teixeira

Dear students,

As you know the first GFC test is approaching. The subjects covered in this test will include everything that was taught by profs. Nuno Mira, Rodrigo Costa and Jorge Leitão. 
As an example, I have upload last years test and exams into this webpage.
Work hard to get top grades!
Miguel Teixeira

AntiSmash results Actinobacteria

7 novembro 2018, 16:37 • Rodrigo Costa

Dear Students,

Below the message I just received from AntiSmash, with a functional link. 

If you are experiencing difficulties with the link, please do let me know.

I will now submit an “Actinomycetales” job and share the results with you as soon as this gets done.

All the best,

Rodrigo



"Dear antiSMASH user,

The antiSMASH job bacteria-a74602cd-05f9-40c2-bab5-53ad03c0c978 you submitted on 2018-11-07 10:58:23.171167 with the filename
'Actinobacteria_1024981.contigs.fasta' has finished with status done.

You can find the results on
https://antismash.secondarymetabolites.org/upload/bacteria-a74602cd-05f9-40c2-bab5-53ad03c0c978/index.html

Results will be kept for one month and then deleted automatically.


If you found antiSMASH useful, please check out
https://antismash.secondarymetabolites.org/#!/about
for information on how to cite antiSMASH."



Metagenomics - Update on the antiSmash server and our plan to go around it

7 novembro 2018, 11:24 • Rodrigo Costa

Dear all,

As you have noticed, the antiSmash server has been down since last Friday. The storage capacity of the server was affected, and apparently even the jobs sent on Wednesday went lost. The same occurred with the job I sent one week before our classes. I´ve got the results in good order before our lectures, but after Friday the link was not active anymore (this means I can´t share any results with you by now).  


Solution:  

Luckily the server is active again. I have just re-sent the Actinobacteria job to antismash using the settings established in our tutorial. At this point, I strongly suggest that we don´t overload the system with several simultaneous job submissions. We rather wait for the results of the job I sent this morning. If everything goes right, I´ll share, through this page, the link leading to the results with everyone. You will get one week extra to hand in your reports because of the problem we had with the server. We were not lucky this time around, but I trust we will get things back on track.


Contingency plan: if the strategy above doesn´t work and somehow I realize that the html link is not functional, we have a plan B for the report, don´t worry :)

 

All the best everyone,

Rodrigo