Sumários
Lab 3 - Markov Models and HMMs
8 novembro 2016, 17:00 • Ana Teresa Correia de Freitas
1 - The CpG Island problem.
Consider the DNA sequence in file genome.txt. By using tools from the “Sequence
Manipulation Suite (http://www.bioinformatics.org/sms2/)” and CpGPlot available at
(http://www.ebi.ac.uk/Tools/emboss/cpgplot/index.html?) the EMBL-EBI web site,
characterize your genomic sequence and detect regions that are rich in the CpG pattern.
2 - Viterbi and Forward algorithms
Probabilistic models
8 novembro 2016, 12:30 • Ana Teresa Correia de Freitas
HMMs, Forward algorithm, Backward-Forward algorithm. Learning probabilities.
Lab 3 - Markov Models and HMMs
8 novembro 2016, 09:30 • Ana Teresa Correia de Freitas
1 - The CpG Island problem.
Consider the DNA sequence in file genome.txt. By using tools from the “Sequence
Manipulation Suite (http://www.bioinformatics.org/sms2/)” and CpGPlot available at
(http://www.ebi.ac.uk/Tools/emboss/cpgplot/index.html?) the EMBL-EBI web site,
characterize your genomic sequence and detect regions that are rich in the CpG pattern.
2 - Viterbi and Forward algorithms
Lab 3 - Markov Models and HMMs
7 novembro 2016, 14:00 • Ana Teresa Correia de Freitas
1 - The CpG Island problem.
Consider the DNA sequence in file genome.txt. By using tools from the “Sequence
Manipulation Suite (http://www.bioinformatics.org/sms2/)” and CpGPlot available at
(http://www.ebi.ac.uk/Tools/emboss/cpgplot/index.html?) the EMBL-EBI web site,
characterize your genomic sequence and detect regions that are rich in the CpG pattern.
2 - Viterbi and Forward algorithms
Probabilistic models
7 novembro 2016, 12:30 • Ana Teresa Correia de Freitas