Planeamento
Aulas Teóricas
Introduction to computational biology
Basic concepts on molecular biology.
Introduction to computational biology
Basic concepts on algorithms and data structures.
Pairwise alignment
Alignment concepts. Edit distance. Scoring function. PAM and Blosum matrices.
Pairwise alignment
Alignment algorithms: Needleman-Wunch and Smith-Waterman. BLAST.
Multiple Sequence alignment
Alignment algorithms: Greedy alignment and CLUSTAL W.
Multiple Sequence alignment
Multiple alignment scoring models. Exercises.
String matching
Combinatorial Pattern Matching. Suffix Trees.
String matching
Efficient alignment of reads for resequencing applications
Molecular Phylogenetics
Molecular Phylogenetics - part I
Molecular Phylogenetics
Molecular Phylogenetics - part II
Unsupervised learning
Clustering algorithms - K-means
BIclustering algorithms
Cheng and Church algorithm