Metabolic pathway modeling

16 dezembro 2016, 11:00 • Miguel Nobre Parreira Cacho Teixeira

Metabolic pathway modeling using the COPASI software. Mathematical description of biochemical pathways. Simulation of pathway behavior upon changes in enzyme kinetic parameters and upon changes in substrate concentrations.

Metabolic pathway modeling

15 dezembro 2016, 09:30 • Miguel Nobre Parreira Cacho Teixeira

Metabolic pathway modeling using the COPASI software. Mathematical description of biochemical pathways. Simulation of pathway behavior upon changes in enzyme kinetic parameters and upon changes in substrate concentrations.

PhD student project presentations

15 dezembro 2016, 08:00 • Miguel Nobre Parreira Cacho Teixeira

PhD student project presentations, specifically:

Luís Martins - “In silico identification of putative galacturonic acid transporters in fungi”

Andreia Pimenta – “A genome-wide computational analysis of serine-rich repeat adhesins: special focus on the genus Burkholderia”

Ana Reis – “Disclosing the adaptation processes of Mycobacterium tuberculosis complex bacteria”

Isabel Seixas – “Genome sequence of the non-conventional wine yeast Hanseniaspora guilliermondii UTAD222”

Metabolic pathway modeling

14 dezembro 2016, 12:30 • Miguel Nobre Parreira Cacho Teixeira

Metabolic pathway modeling using the COPASI software. Mathematical description of biochemical pathways. Simulation of pathway behavior upon changes in enzyme kinetic parameters and upon changes in substrate concentrations.

Introduction to Systems Biology

14 dezembro 2016, 11:00 • Miguel Nobre Parreira Cacho Teixeira

Introduction to Systems Biology. Definition and goals of this new discipline. Mathematical modeling of biochemical and regulatory pathways: general concepts, constraints and assets. Genomic Scale Models. Sctoichiometric matrix. Fluxome analysis.