Bioinformatics tools for protein structural analysis

14 novembro 2013, 09:30 • Arsénio do Carmo Sales Mendes Fialho

Databases; molecular visualization; structural alignments; Comparison of 3D protein structures; structure-based alignments; superimposition of protein structures; molecular surface of proteins; phylogeny; protein structure prediction (secondary and 3D structures)

Expression, phospho and redox proteomics

14 novembro 2013, 08:00 • Miguel Nobre Parreira Cacho Teixeira

New approaches to 2-DE-based expression proteomics. Differencial Gel Electroforesis (DIGE). Global analysis of protein modifications: phospho and glycoproteomics; redox proteomics. Non 2-DE-based expression proteomics.

Bioinformatics tools for protein structural analysis

13 novembro 2013, 12:30 • Arsénio do Carmo Sales Mendes Fialho

Databases; molecular visualization; structural alignments; Comparison of 3D protein structures; structure-based alignments; superimposition of protein structures; molecular surface of proteins; phylogeny; protein structure prediction (secondary and 3D structures)

Expression Proteomics based on 2-DE

13 novembro 2013, 11:00 • Miguel Nobre Parreira Cacho Teixeira

Expression Proteomics based on 2-dimensional electrophoresis: context, experimental design, examples and limitations.

RNomics practice

8 novembro 2013, 11:00 • Jorge Humberto Gomes Leitão

Sequence homology search using the Rfam database.

RNA secondary structure prediction.

sRNA target prediction.