Sumários

Probabilistic models

9 novembro 2015, 14:00 • Ana Teresa Correia de Freitas

Evaluation lab.

CpG islands detection and sequence annotation.
Viterbi and forward algorithm

Molecular Phylogenetics

9 novembro 2015, 12:30 • Ana Teresa Correia de Freitas

Introductory concepts for Molecular Phylogenetics. What do the phylogenetic trees represent. Use of DNA vs Protein. Essential steps for phylogenetic analysis.

Lab #4 : Probabilistic models

3 novembro 2015, 17:00 • Ana Teresa Correia de Freitas

CpG islands identification: algorithms and Genebank annotation.

ORFinder: HMM for gene finding
Programming:Viterbi and Forward algorithms

Work evaluation for a large number of groups

MicroArrays data analysis

3 novembro 2015, 12:30 • Ana Teresa Correia de Freitas

Clustering algorithms:


- K-means
- K-medoids
- K-modes

Examples

Lab #4 : Probabilistic models

3 novembro 2015, 09:30 • Ana Teresa Correia de Freitas

CpG islands identification: algorithms and Genebank annotation.

ORFinder: HMM for gene finding
Programming:Viterbi and Forward algorithms

Work evaluation for a large number of groups