Pairwise and multiple alignment

15 outubro 2013, 09:30 • Ana Teresa Correia de Freitas

Second part of the lab about sequence alignment.

Evaluation lab.

Pairwise and multiple alignment

14 outubro 2013, 14:00 • Ana Teresa Correia de Freitas

Second part of the lab about sequence alignment.

Evaluation lab.

NGS data and genome assembly

14 outubro 2013, 12:30 • Ana Teresa Correia de Freitas

NGS technologies

NGS data formats

Resequencing algorithms and data structures

Sequence Aligment

8 outubro 2013, 17:00 • Ana Teresa Correia de Freitas

Pairwise and multiple sequence alignment. Needleman- Wunsch and Simth-Waterman

algorithms

Multiple alignment

8 outubro 2013, 12:30 • Ana Teresa Correia de Freitas

Scoring: LCS, Entropy, Sum-of-pairs

POA and ABA algorithms for mutliple sequence alignment. DAG alignment.