Sumários
Assessment 2 - Pairwise Sequence Alignment
13 outubro 2009, 17:00 • Sara Madeira
Global alignment of nucleotide sequences using Needleman-Wursh algorithm.
Local alignment of aminoacid sequences using Smith-Waterman algorithm.
Programming the Needleman-Wursh algorithm: reporting one optimal global alignment/ reporting all optimal global alignments. The programming language was chosen by the students.
Pairwise Sequence Alignment
13 outubro 2009, 12:30 • Sara Madeira
Heuristic Pairwise Sequence Alignment Algorithms: BLAST and FASTA.
(The topics of this class were postponed to next week due to health problems)
Assessment 2 - Pairwise Sequence Alignment
13 outubro 2009, 09:30 • Sara Madeira
Global alignment of nucleotide sequences using Needleman-Wursh algorithm.
Local alignment of aminoacid sequences using Smith-Waterman algorithm.
Programming the Needleman-Wursh algorithm: reporting one optimal global alignment/ reporting all optimal global alignments. The programming language was chosen by the students.
Assessment 2 - Pairwise Sequence Alignment
12 outubro 2009, 14:00 • Sara Madeira
Global alignment of nucleotide sequences using Needleman-Wursh algorithm.
Local alignment of aminoacid sequences using Smith-Waterman algorithm.
Programming the Needleman-Wursh algorithm: reporting one optimal global alignment / reporting all optimal global alignments. The programming language was chosen by the students.
Pairwise Sequence Alignment
12 outubro 2009, 12:30 • Sara Madeira
Dynamic Programming Pairwise Sequence Alignment Algorithms:
- Needleman-Wunsch Algorithm (global alignment);
- Smith-Waterman Algorithm (local alignment).